Parallel coclustering with augmented matrices algorithm with. The initialization algorithm to decrease the number of iterations is combined with the mapreduce framework. The top row, from left to right, displays the similarity matrix s, the random walk matrix. The time complexity of calculating the eigenvalue decomposition of the similarity matrix is onzk iiter. Since markov chains tend to mix much more quickly on unimodal distributions than on. Tsironis and sozio 16 proposed an implementation of spectral clustering based on mapreduce. The aim is to be able to scale with increasing dataset sizes. Spectral clustering is an algorithm based on graph theory, it does not demand the shape of clusters and converges to the global optimum. Parallel spectral clustering algorithm based on hadoop arxiv. In this paper, a novel hierarchical clustering method is presented as well as its parallel implementation based on mapreduce framework.
The clara is a medoid based clustering algorithm which unlike centroid based chooses real data points as centers. According to the experiment, with the processing data scale being enlarged, the clustering rate is in nearly linear growth, and the proposed parallel spectral clustering algorithm is suitable for. Clustering is a process of organizing data into groups within which the elements are similar in some way. Parallel spectral clustering algorithm based on hadoop. Recently, a new approach has started to get a lot of attention namely spectral methods. It is based on userspecified map and reduce functions. Spectral algorithms georgia institute of technology. Paper 11 used multicore cpu platform to improve the clustering speed. A parallel clustering method study based on mapreduce.
In this paper, we propose a parallel dbscan clustering algorithm based on hadoop, which is a simple yet powerful parallel programming platform. In this work, based on a mapreduce framework, the timeconsuming iterations of the proposed par3pkm algorithm are performed in three phases with the map function, the combiner function, and the reduce function, and the parallel computing process of mapreduce is shown in figure 4. In this paper, we propose a parallel kmeans clustering algorithm based on mapreduce. The proposed approach has been tested and evaluated on largescale log data. Spectral clustering algorithm has been shown to be more effective in finding clusters. The model allows clustering validation in a parallel and a distributed manner using map reduce framework, it is termed mrcentropy. To improve the efficiency of this algorithm, many variants have been developed. International journal of digital content technology and its applications. Accurate spectral clustering for community detection in mapreduce. As an unsupervised learning technique mainly for discovering natural groups or underlying structure of a given dataset, clustering has been an active research subject in many fields including statistical analysis, image analysis, pattern recognition, machine learning, and. But, before this will give a brief overview of the literature in section1. Combined method for e ective clustering based on parallel som and spectral clustering luk a s voj a cek, jan martinovi c, kate rina slaninov a, pavla dr a zdilov a, and ji r dvorsky department of computer science, v sb technical university of ostrava, ostrava, czech republic lukas. Accurate spectral clustering for community detection in.
Nov 24, 20 1 parallel spectral clustering in distributed systems wenyen chen,yangqiu song,hongjie bai,chihjen lin,edward y. In order to deal with the problem, many researchers try to design efficient parallel clustering algorithms. Highperformance kmeans implementation based on a coarse. A parallel kmedoids algorithm for clustering based on. The study of clustering methods based on large scale data is considered as an important task. Parallel based on cloud computing to achieve large data sets. For instance when clusters are nested circles on the 2d plane. Community discovery by propagating local and global. Spectral clustering of a synthetic data set with n 30 points and k 3 clusters of sizes 15, 10 and 5. The proposed map reduce paradigm based clustering algorithm improves the traditional cluster algorithm in a parallelized way. Specifically, in par3pkm, the incremental combiner function is executed between the map tasks and the reduce. Spectral clustering algorithm has proved be more effective than most traditional algorithms in finding clusters. Spectral clustering algorithm has been shown to be more effective in finding clusters than most traditional algorithms. The spectral methods for clustering usually involve taking the top eigen vectors of some matrix based on the distance between points or other properties and then using them to cluster the various points.
The proposed method, asc, is compared to the classical spectral clustering and two stateoftheart accelerating methods, i. Parallel clustering algorithm for largescale biological. However the algorithm is limited by the system and lacks flexibility. Second, the effectiveness of the mapreduce based mregwo is vindicated in terms of fmeasure against the four stateoftheart mapreduce based clustering methods namely parallel kmeans pkmeans, parallel kpso based on mapreduce parallel kpso, mapreduce based artificial bee colony optimization for large scale data clustering mrabc and.
Parallel kmeans clustering of remote sensing images based. We describe different graph laplacians and their basic properties, present the most common spectral clustering algorithms, and derive those algorithms from scratch by several different approaches. Parallel spectral clustering wenyen chen, yangqiu song, hongjie bai, chihjen lin, edward y. Another example is pegasus, a big graph mining tool. Pdf parallel spectral clustering in distributed systems. The model allows clustering validation in a parallel and a distributed manner using mapreduce framework, it is termed mrcentropy. In this paper, we present a hybrid implementation of spectral clustering on a cpugpu heterogeneous platform. Parallel implementation of fuzzy clustering algorithm based. Both implementations were targeted for clusters, and. Designing an efficient parallel spectral clustering. A novel clustering method using enhanced grey wolf. Spectral clustering based on similarity and dissimilarity.
The experimental results demonstrate that the proposed algorithm can scale well and. Parallel markov chain monte carlo via spectral clustering is to replace a single markov chain targeting a highly multimodal distribution with several markov chains, each targeting distinct unimodal distributions. A new agglomerative hierarchical clustering algorithm implementation based on the map reduce framework. Recently, spectral clustering methods, which exploit. Specifically, in par3pkm, the incremental combiner function is. Abstract the kmeans algorithm is one of the most common clustering. Parallel power iteration clustering for big data, models and algorithms for high performance distributed data mining, 733. Although these methods can reduce computational time, they trade clustering accuracy for com. Research open access efficient parallel spectral clustering. In multivariate statistics and the clustering of data, spectral clustering techniques make use of the spectrum eigenvalues of the similarity matrix of the data to perform dimensionality reduction before clustering in fewer dimensions. Recall that the input to a spectral clustering algorithm is a similarity matrix s2r n and that the main steps of a spectral clustering algorithm are 1. Parallel kmans for clustering remote sensing images was reported by lv et al. Surprisingly, despite decades of work, little is known about consistency of most clustering algorithms. The spectral methods for clustering usually involve taking the top eigen vectors of some matrix based on the distance between points or other properties and.
Googles mapreduce or its opensource equivalent hadoop is a powerful tool for building such applications. Spectral clustering methods 41 transform community discovery into an optimization problem of a relaxed quadratic form. Parallel kmeans clustering of remote sensing images based on. The resulting cluster quality is better than that of kmeans. Spectral clustering stages preprocessing construct the graph and the similarity matrix representing the dataset. In table 2, na represents the runtime of that data set is not available because of the limitation of the memory size. Our implementation makes use of the advantages of mapreduce and provides a spectral clustering method that can handle large graphs in a reasonable time. Efficient parallel spectral clustering algorithm design for. Parallel kmeans clustering based on mapreduce ucsb. Landmark selection for spectral clustering based on. Nonetheless, all the aforementioned methods work on infrastructures with multiple computational nodes, which are beyond of this articles scope. An efficient mapreducebased parallel clustering algorithm. Consistency is a key property of statistical algorithms, when the data is drawn from some underlying probability distribution. Community discovery by propagating local and global information based on the mapreduce model kun guo, wenzhong guo, yuzhong chen, qirong qiu.
Table 2 and figure 2a show the runtime of the parallel clustering algorithm. However, spectral clustering suffers from a scalability problem in both memory use and computational time when the. This paper combines the spectral clustering with mapreduce, through evaluation of sparse matrix eigenvalue and computation of distributed cluster, puts forward the improvement ideas and. Dynamic island model based on spectral clustering in. Parallel spectral clustering in distributed systems. Fast density clustering strategies based on the kmeans. Spectral clustering has been successfully applied on large graphs by first identifying their community structure, and then clustering communities. Section 3 describes our parallel spectral clustering algorithm. Section 5 discusses promising directions for future research. However, spectral clustering suffers from a scalability problem in both memory use and computational time when a dataset size is large. Complex cluster shapes kmeans performs poorly because it can only find spherical clusters density based approaches are sensitive to parameters spectral approach use similarity graphs to encode local neighborhood information data points are vertices of the graph connect points which are close 3 21.
A high performance implementation of spectral clustering. Map each point to a lowerdimensional representation based on one or more eigenvectors. Pdf spectral clustering algorithms have been shown to be more effective in. Spectral clustering techniques have seen an explosive development and. The similarity matrix is provided as an input and consists of a quantitative assessment of the relative similarity of each pair of points in the dataset. Classical clustering methods are out of reach in practice in face of big data.
Advantages and disadvantages of the different spectral clustering algorithms are discussed. This paper deals with a new spectral clustering algorithm based on a similarity and dissimilarity criterion by incorporating a dissimilarity criterion into the normalized cut criterion. Parallel spectral clustering in distributed techylib. Mapreduce is taken as the most efficient model to deal with data intensive problems. The approximate optimal solution is obtained by solving the eigenvectors of.
Jun 01, 2015 parallel spectral clustering in distributed systems, ieee transactions on pattern analysis and machine intelligence, 333. As a result, we propose a dynamic island model based on spectral clustering dimsp aiming to improve ef. In order to improve the efficiency of spatial clustering for large scale data, many researchers proposed several efficient clustering algorithms in parallel. Combined method for e ective clustering based on parallel som. Parallel markov chain monte carlo via spectral clustering. There are of researchdeal es on the first three methods, and the spectral clustering is less yet xing et al. In section 4, we present our parallel spectral clustering algorithm and we mark some technical issues and our contributions to the problem. Spectral clustering summary algorithms that cluster points using eigenvectors of matrices derived from the data useful in hard nonconvex clustering problems obtain data representation in the lowdimensional space that can be easily clustered variety of methods that use eigenvectors of unnormalized or normalized. More formally lets denote v as the whole dataset, after splitting the data we get v v 1. It is scalability and has a good acceleration capability, and by. We are expecting to present a highly optimized parallel implemention of all the steps of spectral clustering. Parallel spectral clustering algorithm design based on hadoop in the standard serial spectral clustering algorithms, we know that algorithm computational complexity is mainly presented in the construction of similar matrix, calculation of k minimum feature vectors in laplace matrix and kmeans the clustering.
This article appears in statistics and computing, 17 4, 2007. We consider a commonly used spectral clustering algorithm, proposed by ng et al. An improved parallel kmeans algorithm based on mapreduce. Kway spectral clustering algorithm preprocessing compute laplacian matrix l decomposition find the eigenvalues and eigenvectors of l build embedded space from the eigenvectors corresponding to the k smallest eigenvalues clustering apply kmeans to the reduced n x k space to produce k clusters 29. International journal of digital content technology and its. Parallel spectral clustering, distributed computing. In practice spectral clustering is very useful when the structure of the individual clusters is highly nonconvex or more generally when a measure of the center and spread of the cluster is not a suitable description of the complete cluster. Pdf spectral clustering algorithm has been shown to be more effective in. A parallel implementation of fuzzy cmeans algorithm into. Parallel black hole clustering based on mapreduce request pdf. This tutorial is set up as a selfcontained introduction to spectral clustering.
Table 2 shows the time complexity of existing community detection methods. For cd40 and enolase data sets, the sequential algorithm runtime is obtained, so the speedup is. Nevertheless, good clustering algorithms are still extremely valuable and we can and should rewrite them for parallel clustering using a new map reduce paradigm lv et al. The experimental work shows that the input format, the number of blocks, and the number of reducers can greatly affect the overall performance. Parallel kmeans clustering of remote sensing images based on mapreduce 163 kmeans, however, is considerable, and the execution is timeconsuming and memoryconsuming especially when both the size of input images and the number of expected classifications are large. The algorithm has been defined regarding mapreduce jobs, showing a way of how to adapt a nonembarrassingly parallel algorithm to a platform that is dedicated to embarrassingly parallel methods. Models for spectral clustering and their applications. Clustering has always been a hard problem and an active topic of research. In order to deal with the problem, more researchers try to design efficient parallel clustering algorithms. We use parpack as underlying eigenvalue decomposition package and f2c to compile fortran code. Both implementations were targeted for clusters, and involve frequent data communications which will clearly constrain the overall performance. It is based on parallel kmeans clustering, inherited from mapreduce paradigm, to be used for event segmentation. Parallel techniques are used to enhance the iclustering speed of the original algorithms. This method includes a parallel clustering method parc method and a sampleandignore method sni method.
Parallel spectral clustering algorithm for largescale. Pdf parallel kmeans clustering of remote sensing images. However, its high computational complexity limits its effect in actual application. A fast parallel clustering algorithm for large spatial databases. Spectral clustering involves using the fiedler vector to create a bipartition of the graph. Parallel spectral clustering in distributed systems, ieee transactions on pattern analysis and machine intelligence, 333. However, complex policies make the control of exploration and exploitation more dif. However,spectral clustering suffers from a scalability problem in both memory use and computational time when the size of a data. Chang abstract spectral clustering algorithms have been shown to be more effective in. Onepass mapreducebased clustering method for mixed large. The map job is a preprocessing of the split data where each split part is considered as a value to which a key is attributed, all values with the same key are submitted to the same reducer. The clustering assumption is to maximize the within cluster similarity and simultaneously to minimize the between cluster similarity for a given unlabeled dataset.
Parallel spectral clustering algorithm based on hadoop chapter 1 introduction 1. In this paper, we propose a parallel kmeans clustering algorithm based on mapreduce, which is a simple yet powerful parallel programming technique. In 24, a kdtree was implemented on hadoop, while in 25, a fast parallel kmeans clustering algorithm was developed based on mapreduce. This article first introduced the parallel spectral clustering algorithm research background and significance, and then to hadoop the cloud computing framework. Mapreduce is a programming model that allows easy development of scalable parallel applications to process big data on large clusters of commodity machines. Parallel swarm intelligence strategies for largescale. A novel parallel hierarchical community detection method. Efficient parallel spectral clustering algorithm design. In the rst part, we describe applications of spectral methods in algorithms for problems from combinatorial optimization, learning, clustering, etc. In the second part of the book, we study e cient randomized algorithms for computing basic spectral quantities such as lowrank approximations. Parallel isodata clustering of remote sensing images based.
Parallel spatiotemporal spectral clustering with massive. But once we map the points to jrk ys rows, they form tight clusters figure lh from which our method obtains the good clustering shown in figure ie. As the number of cores increase, the runtime of parallel affinity propagation decreases greatly. Mapreduce algorithms for big data analysis springerlink. The similarity information is then used to group these points into kclusters. Spectral representation form the associated laplacian matrix compute eigenvalues and eigenvectors of the laplacian matrix. Paper 12 presented a fast clustering algorithm based on gpu graphics processing unit.